Lecture 4 References and readings

Amor, Daniel R, Christoph Ratzke, and Jeff Gore. 2020. “Transient Invaders Can Induce Shifts Between Alternative Stable States of Microbial Communities.” Science Advances 6 (8): eaay8676.

Biroli, Giulio, Guy Bunin, and Chiara Cammarota. 2018. “Marginally Stable Equilibria in Critical Ecosystems.” New Journal of Physics 20 (8): 083051.

Bittleston, Leonora S, Matti Gralka, Gabriel E Leventhal, Itzhak Mizrahi, and Otto X Cordero. 2020. “Context-Dependent Dynamics Lead to the Assembly of Functionally Distinct Microbial Communities.” Nature Communications 11 (1): 1–10.

Cadotte, Marc W, and T Jonathan Davies. 2016. Phylogenies in Ecology: A Guide to Concepts and Methods. Princeton University Press.

Capitán, José A, José A Cuesta, and Jordi Bascompte. 2009. “Statistical Mechanics of Ecosystem Assembly.” Physical Review Letters 103 (16): 168101.

Diamond, Jared M. 1975. “Assembly of Species Communities.” Ecology and Evolution of Communities, 342–444.

Drake, James A. 1991. “Community-Assembly Mechanics and the Structure of an Experimental Species Ensemble.” The American Naturalist 137 (1): 1–26.

Fukami, Tadashi. 2015. “Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects.” Annual Review of Ecology, Evolution, and Systematics 46: 1–23.

Goh, Bo S. 1977. “Global Stability in Many-Species Systems.” The American Naturalist 111 (977): 135–43.

Gotelli, Nicholas J. 1999. “How Do Communities Come Together?” Science 286 (5445): 1684–5.

Gotelli, Nicholas J, and Gary R Graves. 1996. Null Models in Ecology.

Gould, Stephen Jay, and Richard C Lewontin. 1979. “The Spandrels of San Marco and the Panglossian Paradigm: A Critique of the Adaptationist Programme.” Proceedings of the Royal Society of London. Series B. Biological Sciences 205 (1161): 581–98.

Hang-Kwang, Luh, and Stuart L Pimm. 1993. “The Assembly of Ecological Communities: A Minimalist Approach.” Journal of Animal Ecology, 749–65.

Hofbauer, Josef, and Karl Sigmund. 1998. Evolutionary Games and Population Dynamics. Cambridge University Press.

Hubbell, Stephen P. 2001. The Unified Neutral Theory of Biodiversity and Biogeography. Vol. 32. Princeton University Press.

Law, Richard, and R Daniel Morton. 1993. “Alternative Permanent States of Ecological Communities.” Ecology 74 (5): 1347–61.

———. 1996. “Permanence and the Assembly of Ecological Communities.” Ecology 77 (3): 762–75.

MacArthur, Robert. 1970. “Species Packing and Competitive Equilibrium for Many Species.” Theoretical Population Biology 1 (1): 1–11.

Maynard, Daniel S, Carlos A Serván, and Stefano Allesina. 2018. “Network Spandrels Reflect Ecological Assembly.” Ecology Letters 21 (3): 324–34.

Morton, R Daniel, Richard Law, Stuart L Pimm, and James A Drake. 1996. “On Models for Assembling Ecological Communities.” Oikos, 493–99.

Schreiber, Sebastian J, and Seth Rittenhouse. 2004. “From Simple Rules to Cycling in Community Assembly.” Oikos 105 (2): 349–58.

Serván, Carlos A, and Stefano Allesina. 2020. “Tractable Models of Ecological Assembly.” bioRxiv.

Serván, Carlos A, José A Capitán, Jacopo Grilli, Kent E Morrison, and Stefano Allesina. 2018. “Coexistence of Many Species in Random Ecosystems.” Nature Ecology & Evolution 2 (8): 1237.

Sigmund, Karl. 1995. “Darwin’s "Circles of Complexity": Assembling Ecological Communities.” Complexity 1 (1): 40–44.

Solé, Ricard V, and Sergi Valverde. 2006. “Are Network Motifs the Spandrels of Cellular Complexity?” Trends in Ecology & Evolution 21 (8): 419–22.

Suweis, Samir, Filippo Simini, Jayanth R Banavar, and Amos Maritan. 2013. “Emergence of Structural and Dynamical Properties of Ecological Mutualistic Networks.” Nature 500 (7463): 449–52.

Weiher, Evan, and Paul Keddy. 2001. Ecological Assembly Rules: Perspectives, Advances, Retreats. Cambridge University Press.